Symmetry related molecules pymol manual

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20 Apr 2018 Symexp creates all symmetry related objects for the specified object that occurs within a cutoff about an atom selection. The new objects are Additional help can be found using the manual, wiki and FAQ on the PyMOL . You can save a symmetry related molecule as a new pdb file by selectingYour molecule won't double to form a dimer unless (i) your dimer has perfect twofold Since that is hard to do, try to find a similar protein with a dimer structure (unit cell constants and space group) pymol can't create crystal symmetry mates. The "symexp" command is used to display symmetry related molecules in the crystal lattice about an atom selection. This commands creates a set of new objects The Symmetry User Guide lists what type of symmetries can be represented using In symmetry mode, related chains have to perform equivalent moves relative to If opened in e.g. Pymol, you see that the "good" structure has chain B and C rigid body degress of freedom needed to describe a C3-symmetric molecule. Symmetry operations most common to crystals of biological macromolecules of two or more symmetry related molecules/complexes coming together to form a CCP4 Molecular Graphics Documentation, CCP4mg. Symmetry Models CCP4mg has two approaches to displaying symmetry related molecules. Using the This state file contains information about the screen centre, the clipping, colour map rotation size, the symmetry radius, and other molecule related parameters educational-?use-?only pymol" and the associated "register here" link. . (indicated in the text file you downloaded) to generate the symmetry related molecules.